PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000807
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family YABBY
Protein Properties Length: 186aa    MW: 20701.8 Da    PI: 7.9306
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000807genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY179.91.4e-5591704167
      YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                 +sseq+ yvqC+ C+til+v+vP++ l++vv vrCG C+ llsvn+ak s     ll++ sh         l + ++++  l+s   +++  +++++  
  Cla000807   9 ADSSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCSGLLSVNMAKPSfipfDLLTSLSH--------NLFNVGQKHYCLDSLSNTSDLITSYHNII 100
                679*******************************************99988444444455444........44556666666777777777766666665 PP

      YABBY 100 klsenedee..vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                +  e++d+   +p +p v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++ 
  Cla000807 101 HNHEDDDDViiIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPAMAHKEAFKTAAKNWAHLPPVN 170
                544444444114555669*************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.0E-5411170IPR006780YABBY protein
SuperFamilySSF470952.09E-9116168IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-6120168IPR009071High mobility group box domain
CDDcd000844.59E-6127168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSTVEQLLAD SSEQIRYVQC GLCSTILLVN VPYSNLSMVV SVRCGNCSGL LSVNMAKPSF  60
IPFDLLTSLS HNLFNVGQKH YCLDSLSNTS DLITSYHNII HNHEDDDDVI IIPPTPVVNK  120
PPEKKQRAPS AYNQFIKEEI RRLKAENPAM AHKEAFKTAA KNWAHLPPVN AAAGVDHMTM  180
RKKNVM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143066.21e-109PREDICTED: axial regulator YABBY 4-like
SwissprotQ9LDT37e-51YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A0A0LK601e-109A0A0A0LK60_CUCSA; Uncharacterized protein
STRINGVIT_01s0127g00330.t018e-60(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.12e-48YABBY family protein